PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10011162m
Common NameCICLE_v10011065mg
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family ARF
Protein Properties Length: 732aa    MW: 82094.5 Da    PI: 6.5127
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10011162mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B372.84.3e-23127228199
                      EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS
               B3   1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 
                      f+k+lt sd++++g +++p++ ae+       +++++  ++l+ +d++  +W++++i+r++++r++lt+GW+ Fv+a++L +gD+v+F   +++
  Ciclev10011162m 127 FCKTLTASDTSTHGGFSVPRRAAEKVfpsldfSLQPPA-QELIARDLHDVEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVLFI--WNE 217
                      99*****************************9777666.49************************************************..888 PP

                      EE..EEEEE-S CS
               B3  89 efelvvkvfrk 99 
                      + +l+++++r+
  Ciclev10011162m 218 KNQLLLGIRRA 228
                      9999***9986 PP

2Auxin_resp116.32.6e-38253336183
       Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                      aahaa+t+s F+v++nPras+seFv+++ k++ka+  ++vsvGmRf+m fete+ss rr++Gt++g+sdldpvrW+nS+Wrs+k
  Ciclev10011162m 253 AAHAAATNSCFTVFFNPRASPSEFVIPLTKYVKAVFhTRVSVGMRFRMLFETEESSVRRYMGTITGISDLDPVRWSNSHWRSVK 336
                      79********************************86599******************************************985 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019367.46E-48113256IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.103.2E-39120242IPR015300DNA-binding pseudobarrel domain
CDDcd100176.66E-21126227No hitNo description
SMARTSM010197.3E-23127229IPR003340B3 DNA binding domain
PROSITE profilePS5086311.97127229IPR003340B3 DNA binding domain
PfamPF023621.8E-21127228IPR003340B3 DNA binding domain
PfamPF065073.5E-33253336IPR010525Auxin response factor
PROSITE profilePS5174519.526611695IPR000270PB1 domain
PfamPF023096.1E-5623695IPR033389AUX/IAA domain
SuperFamilySSF542772.35E-6627685No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009734Biological Processauxin-activated signaling pathway
GO:0009908Biological Processflower development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 732 aa     Download sequence    Send to blast
MKLSTSGLCQ QGHEGDNKCL NSELWHACAG PLVSLPTVGT RVVYFPQGHS EQVAATTNKE  60
VDSHIPNYPN LPPQLICQLH NVTMHADVET DEVYAQMTLQ PLSPEEQKDT FVPIELGIPS  120
KQPTNYFCKT LTASDTSTHG GFSVPRRAAE KVFPSLDFSL QPPAQELIAR DLHDVEWKFR  180
HIFRGQPKRH LLTTGWSVFV SAKRLVAGDS VLFIWNEKNQ LLLGIRRAIR PPTVMPSSVL  240
SSDSMHIGLL AAAAHAAATN SCFTVFFNPR ASPSEFVIPL TKYVKAVFHT RVSVGMRFRM  300
LFETEESSVR RYMGTITGIS DLDPVRWSNS HWRSVKVGWD ESTAGERQPR VSLWEIEPLT  360
TFPMYPSLFP LRLKRPWHPG TSSFNDNRDE TGSGLNWLRG GTGEQGLTTL NFQSLGMFPW  420
MQQRVEPSFL GNDHNQQYQA MLAAGMQSGD PVRQQFMQLQ QPFQYLQQSG SQNPLQLKQQ  480
QVIQQSIPHN LLPAQSQILT ENIPQHLLQQ LNSQAEDRAQ QQQQPQQHMY HDALQIRTDE  540
LLQRQQSNLP SPSFSKANFM DSSTEISVSI SPMQNMLGSL PEGSGNLLNF SGAGPSMLRQ  600
QFPQQSLGSK YEPSQVYKSG SVGRSLDISR FSSYNELREE LGQMFGIEGK FEDPLRSGWQ  660
LVFVDRENDV LLLGDDPWEA FVSNVWYIKI LSPEDVQKMG EQGVESFSPS SGQRANSRGN  720
CGRDPVGSLE Y*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A1e-1572035751388Auxin response factor 5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that binds specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). {ECO:0000256|RuleBase:RU004561}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00033PBMTransfer from AT5G37020Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006430415.10.0hypothetical protein CICLE_v10011065mg
SwissprotQ9FGV10.0ARFH_ARATH; Auxin response factor 8
TrEMBLV4SXA60.0V4SXA6_9R
STRINGPOPTR_0017s01870.10.0(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G37020.20.0auxin response factor 8